Hi Jean
Cement board doesn't add strength to your floor so it doesn't matter which you use. The 1/4" will work just as good as the thicker sizes, but just make sure to set the board into a fresh bed of mortar as the manufacturer recommends.
Make sure that your floor is solid before any membrane such as cement board or Ditra is applied so that you don't have problems in the future. Tell us what is on the floor now including your joists sizes and spacing so we can more accurately help you.
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Harry Dunbar