Sometimes when trowelling thinset fairly thick,as an alternative to a levelling and patching mortar,the mortar can "tent" and crack.It will be unbonded at that spot.
This is because the thinset screed dries inconsistently due to air movement on the top.Thinset mortar should be covered by something when it is thick,such as with a tile.

Levelling mortars are designed so that the screed dries within.It has different drying properties.